PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011083338.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NF-X1
Protein Properties Length: 1120aa    MW: 121135 Da    PI: 8.1279
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011083338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.83.6e-06307325119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H C+++CH GpC+pC+
  XP_011083338.1 307 CGRHHCERICHVGPCDPCQ 325
                     ******************6 PP

2zf-NF-X118.93.2e-06525543119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H+C++lCH G CppC 
  XP_011083338.1 525 CGQHSCISLCHSGHCPPCL 543
                     ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.24E-7129200No hitNo description
PROSITE profilePS500168.796137198IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.332140196IPR001841Zinc finger, RING-type
PROSITE patternPS013590140195IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.75E-6229290No hitNo description
SMARTSM004380.023252270IPR000967Zinc finger, NF-X1-type
PfamPF014228.4254269IPR000967Zinc finger, NF-X1-type
CDDcd060082.47E-11297345No hitNo description
PfamPF014221.0E-4307324IPR000967Zinc finger, NF-X1-type
SMARTSM004382.4E-4307326IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-8361404No hitNo description
PfamPF014220.018371388IPR000967Zinc finger, NF-X1-type
SMARTSM004380.003371390IPR000967Zinc finger, NF-X1-type
CDDcd060089.83E-13419467No hitNo description
PfamPF014221.4E-4429446IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0022429448IPR000967Zinc finger, NF-X1-type
PfamPF0142218487498IPR000967Zinc finger, NF-X1-type
SMARTSM00438130487521IPR000967Zinc finger, NF-X1-type
CDDcd060085.87E-8515558No hitNo description
PfamPF014228.7E-5525542IPR000967Zinc finger, NF-X1-type
SMARTSM004384.0E-4525544IPR000967Zinc finger, NF-X1-type
CDDcd060081.19E-4572620No hitNo description
SMARTSM004380.44582600IPR000967Zinc finger, NF-X1-type
PfamPF014228.5589599IPR000967Zinc finger, NF-X1-type
PfamPF014220.012635650IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013635665IPR000967Zinc finger, NF-X1-type
PfamPF0142211667693IPR000967Zinc finger, NF-X1-type
SMARTSM004380.055674695IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3306.4E-4920962IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MNFSGQNQRR ESNNRRPRSN NSLRNNRCEW VPRGSAPAPA PAPAVAAVVP SASVNGLSQN  60
ESQNGGEPAT RPARPGTPSS NRTHHGSRGN PGRYISQREK GKEEKGKYNH QKNAEVLKSI  120
NIPQLVQEIQ DKLLKGSVEC MICYDMVRRS APIWSCSSCY SIFHLTCIKK WARAPTSTDL  180
LAEKNQGCNW RCPGCQSVQL MSAKEIRYVC FCGKRPDPPS DLYLTPHSCG EPCGKPLERE  240
LPGSGMVKED MCPHVCVLQC HPGPCPPCKA FAPPRRCPCG KEVITTRCSD RKSVLTCGRK  300
CDKLLGCGRH HCERICHVGP CDPCQVLLNA SCFCKKKVEV VLCGDMIVKG EVKGEDGVFS  360
CSLTCEKKLN CGNHVCHETC HPGPCGECEL LPSKIKTCCC GKTSLNEDRR SCLDPIPTCS  420
QICGKILPCG LHRCQDTCHS GVCPPCHVLV NQKCRCGSTS RTAECYKTVT ENEKFTCDKP  480
CGRKKSCGRH RCSERCCPLS NSSTASLVDW DPHLCSMPCE KKLRCGQHSC ISLCHSGHCP  540
PCLETIFTDL TCACGRTSIP PPLPCGTPPP SCQYPCSVSQ PCGHLSSHSC HFGDCPPCSV  600
PVAKECVGGH VVLRNIPCGS KDIRCNKLCG KTRQCGLHAC SRTCHPPPCD SSATSSTSAK  660
ASCRQTCGAP RRDCRHTCTA LCHPSTSCPD VRCEFPVTIT CSCGRVTATV PCDAGGSSGG  720
YTVDTVLEAS ITQKLPVSLQ PAEGNGQRVP LGQRKLMCDD ECAKMERKKV LADAFGINPP  780
NLDALHFGEN ASVSEVLSDL LRRDPKWVLS VEERCKYLVL GRGRGGINAL KVHVFCAMAK  840
DKRDAVRLIA ERWKLSVNAA GWEPKRFVVV HVTPKSKAPA RMLGVKSCNP GNMLQPPVFD  900
PLVDMDPRLV VALFDLPRDA DVSALVLRFG GECELVWLND KNALAVFSDP ARAATAMRRL  960
DQGSVYYGAV SVPQNGGASA MASGAGAWGS AAVSKDVATA AALKGNPWKK VVLQDSGWNE  1020
SSWGAEEWSP NAADTKSRAR TEEEDPIAAS RNRWSVLQPG GTSGSSDVSV KIENLQKQPE  1080
NPSTSGSKVD ESNLNLPVQR EGVEDDVSGD VVDDWENAYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083338.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A022QA750.0A0A022QA75_ERYGU; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1